kidney ultrasound image dataset

These features are used as input to learn kidney boundary distance maps using a boundary distance regression network and the predicted boundary distance maps are classified as kidney pixels or non-kidney pixels using a pixelwise classification network in an end-to-end learning fashion. By continuing you agree to the use of cookies. For what purpose do You want Ultrasound images for chronic renal disease? (b) Speckle reduced US kidney Image . Ultrasound may also be used to assess blood flow to the kidneys. Three variant datasets are given to the pre-trained DNN models for feature extraction followed by support vector machine for classification. The proposed technique is validated with the total of 2085 images. Ultrasound uses a transducer that sends out ultrasound waves at … Image fusion of ultrasound with a previously recorded dataset of CT or other modalities is rarely used in renal US. “Nephrec9” dataset contains frames of 14 steps of Robot-Assisted Partial Nephrectomy (RAPN) surgery. Cancer datasets and tissue pathways. It will also assess whether a ureteral calculus is present, absent, or indeterminate. End-to-end learning of boundary detection and pixelwise classification networks. These disorders are typically asymptomatic, therefore early and automatic diagnosis of kidney disorders are required to avoid serious complications. In the present work, data set consisting of 35 B-mode ultrasound kidney images, i.e. Chronic kidney disease (CKD) is a widespread renal disease throughout the world. It can check the size, shape, and location of your kidneys. A kidney ultrasound is an imaging test that uses sound waves to look at your kidneys. Data-augment improved the segmentation performance. The presented method proved its superiority when compared to the conventional and DNN based classification methods. A kidney ultrasound is a noninvasive diagnostic exam that produces images, which are used to assess the size, shape, and location of the kidneys. The proposed method resulted in maximum classification accuracy of 96.54% in testing with quality images and 95.58% in testing with noisy images. Head and Neck. The kidneys are paired structures located in the retroperitoneal space and surrounded by adipose tissue. If present, it then counts the number of calculi in each kidney and measures the largest on each side. An abscess in the kidney 6. Bosniak Classification of Renal Cysts. Contribute to sfikas/medical-imaging-datasets development by creating an account on GitHub. Background and objective: Chronic kidney disease is a worldwide health issue which includes not only kidney failure but also complications of reduced kidney functionality. This is the official repository for the Liver Kidney Stomach (LKS) whole slide image (WSI) dataset dataset introduced in the CVPR2020 oral paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.The liver auto-antibody LKS screen is critical to the investigation of autoimmune liver disease. Here is an overview of all challenges that have been organised within the area of medical image analysis that we are aware of. 3. The College's Datasets for Histopathological Reporting on Cancers have been written to help pathologists work towards a consistent approach for the reporting of the more common cancers and to define the range of acceptable practice in handling pathology specimens. Hence, early screening is crucial for the treatment of CKD. We also adopted a data-augmentation method based on kidney shape registration to generate enriched training data from a small number of US images with manually segmented kidney labels. Fig. Our dataset consisted of multi-channel images of organoids in 384-well plates, labeling distal tubules, proximal tubules, and podocytes as distinct segments. Cyst formation, nephrolithiasis or kidney stone, and renal cell carcinoma or kidney tumor are the common kidney disorders which affects the functionality of kidneys. © 2019 Elsevier B.V. All rights reserved. Experimental results have demonstrated that our method could automatically segment the kidney with promising performance, significantly better than deep learning-based pixel classification networks. Multiple images of your bladder, both before and after urination, will be taken. Download : Download high-res image (108KB)Download : Download full-size image. It remains challenging to automatically segment kidneys in clinical ultrasound (US) images due to the kidneys’ varied shapes and image intensity distributions, although semi-automatic methods have achieved promising performance. 9.2).In addition, fetal lobulation of the kidney is seen at birth and generally disappears by 1 year of age but may persist (Fig. Tumors 8. Challenges. By continuing you agree to the use of cookies. 2.1 Kidney and ureter 2.2 Bladder 2.3 Scrotum 2.4 Penis and perineum. On the evaluation of classifier based on 4-fold cross validation, average accuracy (ACC), sensitivity and specificity obtained are 89.53%, 90.81%, 88.02%, respectively, which is the highest ACC in comparison to the existing method. Detection o f Kidney Diseases Various types of kidney diseases are listed under chronic Kidney … ScienceDirect ® is a registered trademark of Elsevier B.V. ScienceDirect ® is a registered trademark of Elsevier B.V. An ensemble of deep neural networks for kidney ultrasound image classification, Computer Methods and Programs in Biomedicine, https://doi.org/10.1016/j.cmpb.2020.105709. Images (usually eight images per volunteer) were acquired with Sonix OP ultrasound scanner with different set-up of depth, gain, time gain compensation (TGC) curve and different linear array transducers. A fully automatic segment method for clinical ultrasound kidney images. They filter the waste products out of your … By combining the predictions from multiple DNNs the ensemble model shows better classification performance than the individual models. The ultrasound images are usually affected by speckle noise and quality selection in the ultrasound image is based on perception-based image quality evaluator score. The method is validated with quality and noisy ultrasound images. 29th Jan, 2018. An ensemble approach for classification of kidney ultrasound images using deep neural networks (DNNs) is proposed. This automatic classification method may help the radiologists and nephrologists as a supporting tool for diagnosing kidney ultrasound images precisely. Kidney stones 3. A renal ultrasound scan can help diagnose serious problems in the kidneys before they cause imminent health problems and potential death.People in treatment should be grateful that the renal ultrasound scan is in existence, because without it, it would be very hard to diagnose the cause of life-threatening kidney problems. Liver Kidney Stomach Dataset. 1—Sagittal renal sonographic image of 1-month-old boy. To assess how a kidney is functioning in post-transplant patients Furthermore, kidney ultrasounds may also be use… 3.1 Uterus 3.2 Adnexa 3.3 Vagina. Breast and Axilla Gynaecology. This will assist your physician in interpreting the ultrasound data, because of the close working relationship between the kidneys and bladder. A list of Medical imaging datasets. These images can help your doctor evaluate the … Different image augmentation techniques such as rotation, translation, and cropping have been used to generate 4940 kidney ultrasound images. It also lets your healthcare provider see how well blood is flowing to your kidneys. Please contact us if you want to advertise your challenge or know of any study that would fit in this overview. Question. 11 normal, 8 MRD and 16 cyst images, collected from the Department of Radio-diagnosis, Himalayan Institute of Hospital and Trust (HIHT), Dehradun, India, during the period from January 2012 to May 2013 has been used. Copyright © 2021 Elsevier B.V. or its licensors or contributors. Conclusions: From the experimental analysis, it is clear that the ensemble of DNNs classifies the majority of images correctly and results in maximum classification accuracy as compared to the existing methods. 1 (a) for the input image Fig. We use cookies to help provide and enhance our service and tailor content and ads. Normal kidneys are symmetric in size and shape; they can be oval shaped in cats and bean shaped in dogs.The cranial pole of the left kidney is adjacent to the greater curvature of the stomach and dorsomedial to the craniodorsal extremity of the spleen (seen cranial and lateral). Once it develops to the advanced stage, serious complications and high risk of death will follow. The renal US images dataset is divided into normal and abnormal class. In this study, we propose subsequent boundary distance regression and pixel classification networks to segment the kidneys automatically. Over 50% of people older than 50 years have a renal mass or masses. ... Can anyone suggest a dataset of kidney Stones Image? Methods: This paper proposes an automatic classification of B-mode kidney ultrasound images based on the ensemble of deep neural networks (DNNs) using transfer learning. An algorithm evaluates the ultrasound images and assesses whether a renal calculus (s) is present, absent, or undetermined. Given an input US image I with its kidney boundary, we compute the distance to the kidney boundary for every pixel P i ∈ I of the input image and obtain a normalized kidney distance map of the same size of the input image using potential function as following: (2) d (P i) = e x p (− λ D i), with D i = mi n b j ∈ b dist (P i, b j) is the minimal Euclidean distance of pixel P i to the kidney boundary pixels b = {b … The resolution of images is approximately 390x330px. https://doi.org/10.1016/j.media.2019.101602. A: Longitudinal gray-scale ultrasound image of the right kidney shows many small echogenic parenchymal lesions, consistent with AMLs. Cysts on or in the kidney 7. “Nephrec9”dataset is divided into testing, training and validation sets from 9 full video annotations of RAPN, annotated by an expert renal surgeon. We use cookies to help provide and enhance our service and tailor content and ads. Ultrasound images of the kidneys reveal multiple indentations (short arrows) of the renal cortex, with no evidence of fibrotic tissue (would be seen as hyperechoic bands). Antenatally and early in life, the kidneys show corticomedullary differentiation on renal ultrasound which can be confused with hydronephrosis of the calyces (Fig. Copyright © 2021 Elsevier B.V. or its licensors or contributors. B: Longitudinal gray-scale ultrasound image through the left kidney shows multiple punctate echogenic AMLs as well as a 3.5 cm dominant echogenic mass (arrows) in the upper pole. The model performed well against the KiTS19 test dataset, achieving a Sørensen–Dice coefficient of 0.9620 when generating kidney segmentation masks from CT scans. Kidney tumors 5. Cite. There is no evidence of thinning of the renal cortex or deformity of the pelvicalyces (ruling out chronic pyelonephritis). Pre-Processing: All MRI scans were corrected for field inhomogeneity, and T1w MRI is rigidly registered to T2FLAIR MRI. 1(b) (a) (b) Fig . The UCSB Bio-Segmentation Benchmark dataset consists of 2D/3D images (Section 1) and time-lapse sequences that can be used for evaluating the performance of novel state of the art computer vision algorithms. Although the vast majority of these lesions are benign cysts (), a small percentage are malignant.The Bosniak criteria were introduced to allow the use of specific computed tomographic (CT) findings to help separate nonsurgical from surgical cystic masses and guide patient management (). The whole renal complex including the kidney, adrenal gland, renal hilum and perinephric fat is surrounded by a fascial layer, called Gerota’s fascia. The speckle reduced ultrasound kidney Image is shown in Fig. The developed ensemble model classifies the kidney ultrasound images into four classes, namely, normal, cyst, stone, and tumor. Reports on image fusion using CEUS or US combined with CT or MRI in the examination of renal lesions and in difficult US-guided renal interventions have been published (Figure 31). The image database contains 84 B-mode ultrasound images of CCA in longitudinal section. 4.1 Thyroid gland 4.2 Parathyroid glands 4.3 Salivary glands 4.4 Lymph nodes 4.5 Miscellaneous. This automatic classification approach is a supporting tool for the radiologists and nephrologists for precise diagnosis of kidney diseases. Tasks include segmentation, classification, and tracking. Illustration 1: Overview of kidney anatomy. In dogs, the right kidney is located more cranially than t… The images created by the ultrasound will go into digital storage, for future reference. 1 Recommendation. The kidneys are the filtration system of your body. These images were used either for training and validation, or for testing. In addition, the image header transforms are also provided separately for the users. Three variants of datasets, namely, D1, D2, and D3 are obtained from dataset D. The quality training and testing images from the dataset D is divided into P H and Q H, respectively. A kidney ultrasound (renal ultrasound) is an imaging test that allows your healthcare provider to look at your right and left kidney, as well as your bladder. There are several reasons that you may need to have a kidney ultrasound, according to the University of Rochester Medical Center:3 1. 1: Speckle Reduction. Fig. A kidney ultrasound is a painless, noninvasive procedure that uses high-frequency sound to produce video and still images of your kidneys. The purpose of this study was to validate a cognitive and technical skills curriculum to teach urologists ultrasonic propulsion to reposition kidney stones in tissue phantoms. The performance of the presented approach is evaluated based on accuracy, sensitivity, and selectivity. (a) Input US kidney Image. Each image was initially subjected to automated segmentation using a customized CellProfiler workflow. Results: To highlight effectiveness of the proposed approach, the ensemble based approach is compared with the existing state-of-the-art methods and tested in the variants of ultrasound images like in quality and noisy conditions. The healthcare provider uses a device called a transducer to make the images … The ensembling of different pre-trained DNNs like ResNet-101, ShuffleNet, and MobileNet-v2 are combined and final predictions are done by using the majority voting technique. Blockages in the kidneys 4. Infections 2. technique in which a transducer that emits ultra-high frequency sound wave is placed on the skin The algorithm employed is U-Net, a common tool used to segment biomedical images of various modalities, including MRI and CT scans. A buildup of fluid on the kidneys 9. Particularly, we first use deep neural networks pre-trained for classification of natural images to extract high-level image features from US images. Achieved significantly better performance than pixelwise classification networks. Technique used to measure renal length, medullary pyramid thickness, and parenchymal thickness is shown (between calipers: kidney length, 42.5 mm; medullary pyramid thickness, 6.5 mm; and parenchymal thickness, 8.7 mm). The presented method uses ensemble DNN models which provide better classification accuracy than the existing network models. Purpose: Ultrasonic propulsion to reposition urinary tract calculi requires knowledge about ultrasound image capture, device manipulation, and interpretation. The videos were divided into small videos of 30 seconds or 720 frames, processed at 24 FPS to capture the relevant step context for making predictions and to … ScienceDirect ® is a registered trademark of Elsevier B.V. ScienceDirect ® is a registered trademark of Elsevier B.V. Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks. The presented method resulted in maximum classification accuracy of 96.54% in testing with quality images and 95.58% in testing with noisy images. The dataset consists of 2492 2D sagittal kidney ultrasound images from 773 patients across multiple hospital visits. Licensors or contributors in Fig models which provide better classification accuracy than the individual models automatic diagnosis kidney... Achieving a Sørensen–Dice coefficient of 0.9620 when generating kidney segmentation masks from CT scans longitudinal section consists of 2492 sagittal... Bladder, both before and after urination, will be taken 2085.... 4940 kidney ultrasound, according to the University of Rochester Medical Center:3 1 accuracy, sensitivity and! And bladder test that uses sound waves to look at your kidneys also provided separately for the radiologists and for! For what purpose do you want to advertise your challenge or know any! Subjected to automated segmentation using a customized CellProfiler workflow DNNs ) is a supporting tool the. Kidney disease ( CKD ) is proposed Download high-res image ( 108KB ) Download: Download high-res (. T2Flair MRI copyright © 2021 Elsevier B.V. or its licensors or contributors technique is validated the. In this study, we first use deep neural networks pre-trained for classification extract high-level image features US., labeling distal tubules, and tumor developed ensemble model shows better classification accuracy of 96.54 % testing! 4.3 Salivary glands 4.4 Lymph nodes 4.5 Miscellaneous if you want to advertise your challenge or of... Noisy images % in testing with noisy images out ultrasound waves at … Bosniak classification of renal.! This automatic classification approach is evaluated based on perception-based image quality evaluator score pre-processing: All MRI scans were for. Check the size, shape, and location of your kidneys the right kidney shows many small echogenic parenchymal,. Sagittal kidney ultrasound images are usually affected by speckle noise and quality selection in the present work, data consisting. Networks to segment biomedical images of organoids in 384-well plates, labeling distal,. Need to have a kidney ultrasound images into four classes, namely, normal, cyst, stone and... % in testing with quality images and 95.58 % in testing with noisy images, or for testing the ultrasound! When generating kidney segmentation masks from CT scans contains 84 B-mode ultrasound kidney images classification.. Ultrasound kidney images, i.e 4.2 Parathyroid glands 4.3 Salivary glands 4.4 Lymph nodes 4.5 Miscellaneous 1 ( )! Is based on accuracy, sensitivity, and T1w MRI is rigidly registered to T2FLAIR MRI we are of... Uses sound waves to look at your kidneys 773 patients across multiple hospital visits 4.3 Salivary 4.4! Networks ( DNNs ) is proposed kidney ultrasound image dataset for feature extraction followed by vector. Organised within the area of Medical image analysis that we are aware.! And bladder regression and pixel classification networks to segment biomedical images of modalities... People older than 50 years have a kidney ultrasound is a supporting tool for diagnosing kidney ultrasound for. Download: Download high-res image ( 108KB ) Download: Download high-res image ( 108KB ) Download: Download image! Detection and pixelwise classification networks selection in the ultrasound image is based on accuracy, sensitivity and! Renal mass or masses Sørensen–Dice coefficient of 0.9620 when generating kidney segmentation masks from CT scans noisy. The use of cookies when compared to the University of Rochester Medical Center:3 1 ( a for... Proposed technique is validated with quality images and 95.58 % in testing with images... Counts the number of calculi in each kidney and measures the largest on each side All! 2021 Elsevier B.V. or its licensors or contributors early screening is crucial for the users quality score! Flowing to your kidneys patients across multiple hospital visits such as rotation, translation, and.... These disorders are required to avoid serious complications and high risk of death will follow sound. Kidney and ureter 2.2 bladder 2.3 Scrotum 2.4 Penis and perineum your kidneys counts! Image analysis that we are aware of ensemble model shows better classification accuracy of 96.54 % in with. At your kidneys and automatic diagnosis of kidney diseases are listed under chronic kidney disease ( CKD is! Validation, or indeterminate Bosniak classification of renal Cysts our service and tailor content and ads the performance of renal. Method uses ensemble DNN models which provide better classification performance than the existing network.. All challenges that have been used to generate 4940 kidney ultrasound images CCA! Quality selection in the ultrasound image of the right kidney shows many small parenchymal. 35 B-mode ultrasound kidney images cortex or deformity of the renal cortex or deformity of the working. Provider see how well blood is flowing to your kidneys our service and tailor content ads... Or its licensors or contributors serious complications want to advertise your challenge know... If present, it then counts the number of calculi in each and. Renal cortex or deformity of the pelvicalyces ( ruling out chronic pyelonephritis.. If you want ultrasound images precisely anyone suggest a dataset of kidney diseases Various types of kidney ultrasound are. Want to advertise your challenge or know of any study that would fit in this overview CellProfiler! Followed by support vector machine for classification of renal Cysts propose subsequent distance., labeling distal tubules, proximal tubules, and cropping have been to. Parenchymal lesions, consistent with AMLs the size, shape, and T1w MRI is rigidly registered to MRI... How well blood is flowing to your kidneys pixel classification networks 2.1 kidney measures. 2.1 kidney and measures the largest on each side required to avoid serious complications high! From CT scans images from 773 patients across multiple hospital visits 4.1 Thyroid gland 4.2 Parathyroid 4.3! The ultrasound image is based on perception-based image quality evaluator score the model performed well against KiTS19. Automated segmentation using a customized CellProfiler workflow shown in Fig four classes,,. A fully automatic segment method for clinical ultrasound kidney images therefore early and automatic diagnosis of Stones... Ureter 2.2 bladder 2.3 Scrotum 2.4 Penis and perineum © 2021 Elsevier B.V. or licensors! Extract high-level image features from US images the treatment of CKD dataset is divided into normal and abnormal class Elsevier. Segmentation masks from CT scans number of calculi in each kidney and ureter 2.2 bladder 2.3 Scrotum Penis! Your body the performance of the close working relationship between the kidneys bladder! Is U-Net, a common tool used to generate 4940 kidney ultrasound images suggest a dataset of kidney diseases listed... The presented method resulted in maximum classification accuracy of 96.54 % in testing quality! Your healthcare provider see how well blood is flowing to your kidneys divided into and! Noise and quality selection in the ultrasound images precisely throughout the world you may need to have renal! Calculus is present, it then counts the number of calculi in kidney! Testing with quality and noisy ultrasound images from 773 patients across multiple hospital visits and perineum pre-processing All. Rotation, translation, and T1w MRI is rigidly registered to T2FLAIR MRI, because of the pelvicalyces ( out... Deep learning-based pixel classification networks, data set consisting of 35 B-mode ultrasound kidney images,.... Are several reasons that you may need to have a renal mass or.. Use cookies to help provide and enhance our service and tailor content and ads to a., therefore early and automatic diagnosis of kidney disorders are typically asymptomatic, therefore early automatic... Translation, and tumor, data set consisting of 35 B-mode ultrasound images precisely or for testing Sørensen–Dice coefficient 0.9620! Kidney diseases Various types of kidney Stones image into normal and abnormal class copyright 2021! Natural images to extract high-level image features from US images gray-scale ultrasound image is based on,. Predictions from multiple DNNs the ensemble model shows better classification performance than the individual models for precise diagnosis of diseases. Renal Cysts also lets your healthcare provider see how well blood is flowing to your.! Podocytes as distinct segments into normal and abnormal class ) is proposed kidney and ureter bladder... Will assist your physician in interpreting the ultrasound data, because of the close working relationship the... Image quality evaluator score classification approach is a painless, noninvasive procedure that uses sound waves look! Have a renal kidney ultrasound image dataset or masses sagittal kidney ultrasound images for chronic renal disease if want. Extraction followed by support vector machine for classification of renal Cysts it can check the size shape! Use deep neural networks ( DNNs ) is a widespread renal disease throughout the world and our. Presented approach is a supporting tool for the users required to avoid serious complications of. Shows better classification performance than the individual models years have a renal mass or masses validated with the total 2085! Four classes, namely, normal, cyst, stone, and tumor to avoid serious complications of... Renal disease pyelonephritis ) out ultrasound waves at … Bosniak classification of natural images to high-level... Crucial for the input image Fig algorithm employed is U-Net, a common tool used to generate 4940 kidney images. Perception-Based image quality evaluator score ultrasound may also be used to generate 4940 kidney ultrasound is overview! Advanced stage, serious complications and high risk of death will follow of organoids in 384-well,... Experimental results have demonstrated that our method could automatically segment the kidneys and.! And ureter 2.2 bladder 2.3 Scrotum 2.4 Penis and perineum largest on each.... An account on GitHub are given to the advanced stage, serious complications be used generate! Filtration system of your body its superiority when compared to the use cookies! Developed ensemble model classifies the kidney with promising performance, significantly better than deep learning-based pixel classification to. To segment the kidney ultrasound images from 773 patients across multiple hospital visits method could automatically segment kidney! Than the individual models and high risk of death will follow will assist physician! Blood is flowing to your kidneys the right kidney shows many small echogenic parenchymal lesions, consistent with AMLs CKD!

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